Pinned Repositories
Codes-for-Methylation-Analysis
netCDF-Processing-Pipeline
Processing of netcdf file: Extraction to Plotting Temperature from different Coordinates
RNA-seq-Pipeline-Under-Construction-
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
kashiff007's Repositories
kashiff007/netCDF-Processing-Pipeline
Processing of netcdf file: Extraction to Plotting Temperature from different Coordinates
kashiff007/Codes-for-Methylation-Analysis
kashiff007/RNA-seq-Pipeline-Under-Construction-
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
kashiff007/Aiptasia_long_term_HS
kashiff007/Arabidopsis_thaliana_HS_nucleosome_dynamics
kashiff007/bioinformatics-cafe
Unsorted scripts for bioinformatics
kashiff007/ChIP-seq-Pipeline-macs14
kashiff007/Coursera-Projects
Final projects and assignments of R and Python
kashiff007/H3K9ac-in-Aiptasia-symbiosis
kashiff007/Important-one-liners
Important one liners
kashiff007/kashiff007.github.io
kashiff007/kkashiff007.github.io
kashiff007/My_profile
kashiff007/pca-on-genotypes
kashiff007/pdae_dna_meth
Scripts and important data for the manuscript "Intergenerational epigenetic inheritance in reef-building corals"
kashiff007/RNA-seq-downstream-analysis
RNA-seq differential expression work flow
kashiff007/saltgrass-genome
kashiff007/SFig.4.1
kashiff007/SimplePrograms
Simple scripts including sorting of vcf files, creating strain-specific reference sequences, extracting sequence from reference fasta using genomic coordinates etc.
kashiff007/SRA-data-upload
kashiff007/working_with_dna_meth
Pipeline that I use to process DNA methylation data--both theory and implementation included!