/xenopus-protein-localization

Analysis of junctional protein localization patterns in epithelial tissues

Primary LanguageJupyter NotebookMIT LicenseMIT

A minimal toolset for analyzing protein localization patterns and tissue structure in the Xenopus laevis neural plate epithelium, supporting

  • "Mechanical control of neural plate folding by apical domain alteration".
    Miho Matsuda, Jan Rozman, Sassan Ostvar, Karen Kasza, Sergei Sokol.
    Nature Communications 2023. https://doi.org/10.1038/s41467-023-43973-x


Sample Outputs

cell morphology and tissue structure

cell outline networks

junction morphology

junction intensities

Dependencies

  • scikit-image
  • numpy
  • sknw

Authors

Sassan Ostvar and Karen Kasza