analyses from Materials and Methods section
Intermediate data files available at Extract to the DATA directory.
Download GTF genome annotations and fasta files from Ensembl . Extract to DATA/genomes/GTF and DATA/fasta.
The scripts follow the structure as in Materials and Methods section:
stall_site_calling_and_conservation_analysis
SNP_analysis
GO_enrichment
sequence_analysis
structure_analysis
exon_and_protein_domain_anlysis
TM_domain_analysis
premature_termination_analysis
stats