kathryn-beal

Pinned Repositories

CaVEMan
SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib
Language:C60 18 6813
cgpBattenberg
Battenberg algorithm and associated implementation script
Language:Perl52 25 9116
cgpCaVEManWrapper
Reference implementation of CGP workflow for CaVEMan SNV analysis
Language:Perl6 13 253
dockstore-cgp-irap
Dockerised iRAP for Dockstore.
Language:R0 11 20
VAGrENT
A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences
Language:Perl8 16 297
vcf_flag_modifier
Python application to remove specific flags from VCF files
Language:Python1 11 10
ensembl-draw
*DEPRECATED* Code to draw images on an Ensembl website
Language:Perl0 14 02
ensembl-draw
Code to draw images on an Ensembl website
Language:Perl0 2 00
ensembl-webcode
The code to run an Ensembl website
Language:Perl00
frontend
The frontend for the WSI CoGS student portal website
Language:JavaScript00

kathryn-beal's Repositories

kathryn-beal/ensembl-draw
Code to draw images on an Ensembl website
Language:Perl0 2 00
kathryn-beal/ensembl-webcode
The code to run an Ensembl website
Language:Perl00
kathryn-beal/frontend
The frontend for the WSI CoGS student portal website
Language:JavaScript00