Pinned Repositories
sei-framework
code to run sei and obtain sei and sequence class predictions
sei-manuscript
Code for reproducing the Sei manuscript results
selene
a framework for training sequence-level deep learning networks
PathCORE-T
Methods to build a network of pathway co-occurrence relationships out of expression signatures extracted from transcriptomic compendia.
PathCORE-T-analysis
This repository is in support of the PathCORE-T paper (https://doi.org/10.1101/147645). It contains all the code and necessary data/metadata to repeat all analyses in the paper.
crosstalk-correction
Python implementation of Donato et al. (2013)'s maximum impact estimation. A pre-processing step to pathway analysis.
data-vis-js
those d3.js attempts (just for fun)
kathyxchen.github.io
site re-design for EALC
mlss-genomics-tutorial
Bumblekite MLSS genomics tutorial Aug 2022
selene
a framework for training sequence-level deep learning networks
kathyxchen's Repositories
kathyxchen/kathyxchen.github.io
site re-design for EALC
kathyxchen/selene
a framework for training sequence-level deep learning networks
kathyxchen/crosstalk-correction
Python implementation of Donato et al. (2013)'s maximum impact estimation. A pre-processing step to pathway analysis.
kathyxchen/data-vis-js
those d3.js attempts (just for fun)
kathyxchen/mlss-genomics-tutorial
Bumblekite MLSS genomics tutorial Aug 2022
kathyxchen/pm-tool-tmp
cis350 project
kathyxchen/bioconda-recipes
Conda recipes for the bioconda channel.
kathyxchen/bullfrog
kathyxchen/cos534-final-project
COS534 Final Project code
kathyxchen/day-4-exercises
PDC Day 4, work with VIM, PHP, and SQL
kathyxchen/fileparsing
information extraction from folders of csvs
kathyxchen/flib
kathyxchen/frogfinder
intro to drupal, PDC assignment
kathyxchen/fun-with-github-1
kathyxchen/function
Python library for functional genomics
kathyxchen/gregslist
intro to drupal, PDC assignment, exercise in content management--emulates basic framework of craigslist
kathyxchen/html-scraping-exercise
for personal use; python script which extracts ratings from HTML pages and averages them
kathyxchen/marketBias
data and source code for "Addressing Marketing Bias in Product Recommendations" WSDM'20
kathyxchen/Mentorship
2 basic browser extensions (submit extension unfinished)
kathyxchen/openerp-mods-xmlrpcs
module frameworks and xmlrpc templates created for easy modification and usage
kathyxchen/PathCORE-analysis
This repository is in support of the PathCORE paper. It contains all the code and necessary data/metadata to repeat all analyses in the paper.
kathyxchen/PathCORE-dev
Methods to build a network of pathway co-occurrence relationships out of expression signatures extracted from transcriptomic compendia.
kathyxchen/PathCORE-T-demo
The demo application for the PathCORE paper
kathyxchen/PCC-RL
Reinforcement learning resources for PCC.
kathyxchen/portfolio
portfolio site
kathyxchen/ppin-pipeline
in-progress work on a data-driven pathway analysis
kathyxchen/prelim-website
PDC Day 5, blog with LAMP stack
kathyxchen/rails-practice
PDC ruby on rails week
kathyxchen/scikit-learn
scikit-learn: machine learning in Python
kathyxchen/todo-browser-ext