Pinned Repositories
academic_website
My professional website
adventofcode2020
Advent of Code 2020
cdifficile_gwas
GWAS on C. difficile
clinical_cdifficile_trehalose_variants
Analysis of association between trehalose utilization variants in clinical C. difficile isolates and infection severity
dresden_maps
Contains a data file with locations from The Dresden Files. The data file is to be used for my map tutorial in R.
DresdenColor
R package to create color palettes based on The Dresden Files book covers
hogwash
Three bacterial GWAS methods all rolled into one easy-to-use R package
market_size_app
An interactive dashboard to plot a company's estimated market size.
simulate_data_for_convergence_based_bGWAS
Simulation of genotype and phenotype data to benchmark hogwash, a convergence based bacterial genome-wide association study (bGWAS) method
prewas
R package to perform data pre-processing for more informative bacterial GWAS
katiesaund's Repositories
katiesaund/hogwash
Three bacterial GWAS methods all rolled into one easy-to-use R package
katiesaund/DresdenColor
R package to create color palettes based on The Dresden Files book covers
katiesaund/dresden_maps
Contains a data file with locations from The Dresden Files. The data file is to be used for my map tutorial in R.
katiesaund/market_size_app
An interactive dashboard to plot a company's estimated market size.
katiesaund/simulate_data_for_convergence_based_bGWAS
Simulation of genotype and phenotype data to benchmark hogwash, a convergence based bacterial genome-wide association study (bGWAS) method
katiesaund/academic_website
My professional website
katiesaund/adventofcode2020
Advent of Code 2020
katiesaund/brad_website
Brad Saund's professional website
katiesaund/brownian_motion_tutorial
Tutorial to demonstrate properties of Brownian Motion
katiesaund/cdifficile_gwas
GWAS on C. difficile
katiesaund/clinical_cdifficile_trehalose_variants
Analysis of association between trehalose utilization variants in clinical C. difficile isolates and infection severity
katiesaund/cdifficile_mixed_infection_recurrence
Coding project with Bailey to detect mixed C. difficile infections by MLST from metagenomes
katiesaund/emoji_DNA
Generate DNA string of two random emoji each time your terminal starts
katiesaund/fix_hogwash_null_distribution
katiesaund/fix_hogwash_plotting
Fix bug into hogwash when plotting large datasets
katiesaund/introduction_to_statistical_learning
Working through the textbook "Introduction to Statistical Learning"
katiesaund/JPM_Healthcare_2019
Analysis of healthcare stock changes over JPM week versus rest of the year.
katiesaund/police_military_gear_from_1033_program
Quick look at police departments obtaining military gear through the 1033 program
katiesaund/thesis_background_figures
Generate figures for background section in PhD thesis
katiesaund/tidy_tuesday
A weekly data project in R from the R4DS online learning community