Pinned Repositories
bioinformatics-projects
Collection of selected small bioinformatic projects
deep-learning-specialization-coursera
Deep Learning Specialization by Andrew Ng on Coursera.
genomation
R package for genomic feature analysis and visualization
methylKit
R package for DNA methylation analysis
Minesweeper
Minesweeper implemented in JAVA
pigx_bsseq
bisulfite sequencing pipeline from fastq to methylation reports
katwre's Repositories
katwre/bioinformatics-projects
Collection of selected small bioinformatic projects
katwre/deep-learning-specialization-coursera
Deep Learning Specialization by Andrew Ng on Coursera.
katwre/genomation
R package for genomic feature analysis and visualization
katwre/methylKit
R package for DNA methylation analysis
katwre/pigx_bsseq
bisulfite sequencing pipeline from fastq to methylation reports
katwre/awesome-multi-omics
List of software packages for multi-omics analysis
katwre/awesome_spatial_omics
tools and notes for spatial omics
katwre/aws-for-bioinformatics
AWS for Bioinformatics Researchers
katwre/bimsbbioinfo.github.io
website for the platform
katwre/Bioinformatics-Social-Meeting-September-27-2016
katwre/DAMEfinder
Finds DAMEs - Differential Allelicly MEthylated regions
katwre/devtools
Tools to make an R developer's life easier
katwre/FAME
katwre/fastglm
Fast glm fitting via RcppEigen
katwre/igv-webapp
IGV Web App
katwre/internship_summary
katwre/katwre.github.io
Technical Portfolio
katwre/makeWGBSnake
Snakemake pipeline for WGBS analysis (private repository)
katwre/meth_atlas
katwre/ML-deep_learning
katwre/motifActivity
motifActivity: An R package for the computational reconstruction of transcription regulatory networks from high-throughput data
katwre/Posters
katwre/pyreadr
Python package to read and write R RData and Rds files into/from pandas dataframes. No R or other external dependencies required.
katwre/rworkflows
Continuous integration for R packages. Automates testing, documentation website building, and containerised deployment.
katwre/scGPT
katwre/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
katwre/single_cell_lung_covid19
katwre/survival_analysis
katwre/training-collection
Collection of bioinformatics training materials
katwre/Workflows
Snakemake workflows for best practice genomic analysis