/hadge

Comprehensive pipeline for donor demultiplexing in single cell

Primary LanguageNextflowMIT LicenseMIT

hadge

Nextflow run with conda run with docker run with singularity DOI

Caption

Read the documentation and the associated manuscript

Quickstart

git clone https://github.com/theislab/hadge.git
sh hadge/test_data/download_data.sh
nextflow run main.nf -profile test

Citation

hadge: a comprehensive pipeline for donor deconvolution in single cell

Fabiola Curion, Xichen Wu, Lukas Heumos, Mariana Gonzales Andre, Lennard Halle, Melissa Grant-Peters, Charlotte Rich-Griffin, Hing-Yuen Yeung, Calliope A. Dendrou, Herbert B. Schiller, Fabian J. Theis

bioRxiv 2023.07.23.550061; doi: https://doi.org/10.1101/2023.07.23.550061