/CRC_biomarkers

Repo for analysis of CRC biomarkers from stool samples

Primary LanguagePython

CRC_biomarkers

PACKAGE REQUIREMENTS

  • R >= v3.2 (tested on v3.2.5)
  • python >= 2.7 (tested on v2.7.10)
  • sklearn (tested on v0.18)
  • limma (tested on v3.26.7)

EXAMPLE USAGE

```
cd /path/to/project/
./run_pipeline resources/chipdata_rma.expression_console.sst_rma.txt \
    resources/prefiltered_gene_list.txt \
    resources/patient_info_sheet.txt \
    resources/valid_chips.txt \
    output/testing/testing_results.txt
```

TODO: add detailed instructions