kchu25
Computer science Ph.D. candidate at Washington University in St. Louis
Washington University in St. Louis
Pinned Repositories
.vimrc
CDLmotif.jl-1
Discover DNA sequence motifs using convolutional dictionary learning
Code2motifs.jl
ConvolutionF16.jl
FastaLoader.jl
Load fasta files that contain DNA strings and process it for other downstream tasks
MotifPvalue.jl
Threshold and p-value computations for Position Weight Matrices
MOTIFs.jl
DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.
SeqShuffle.jl
Shuffle the string sequences such that the k-mer frequency is preserved in each string
SimDNA.jl
Generate simulated DNA sequences for regulatory genomics problems
UnfoldCDL.jl
Deep Unfolded Convolutional Dictionary Learning for motif discovery.
kchu25's Repositories
kchu25/SeqShuffle.jl
Shuffle the string sequences such that the k-mer frequency is preserved in each string
kchu25/MOTIFs.jl
DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.
kchu25/FastaLoader.jl
Load fasta files that contain DNA strings and process it for other downstream tasks
kchu25/SimDNA.jl
Generate simulated DNA sequences for regulatory genomics problems
kchu25/MotifPvalue.jl
Threshold and p-value computations for Position Weight Matrices
kchu25/UnfoldCDL.jl
Deep Unfolded Convolutional Dictionary Learning for motif discovery.
kchu25/.vimrc
kchu25/CDLmotif.jl-1
Discover DNA sequence motifs using convolutional dictionary learning
kchu25/Code2motifs.jl
kchu25/ConvolutionF16.jl
kchu25/DeepUnfoldedCDLMotif.jl
Unfolded convolutional learning for motif discovery
kchu25/EM-toy-examples
A toy example to visualize expectation maximization on a mixture of Gaussian
kchu25/GaussianProcesses.jl
A Julia package for Gaussian Processes
kchu25/genomic_benchmark_datasets
quick and dirty script to download the DNA classification dataset and make them to fasta files
kchu25/FastaProcessing.jl
Fasta file processing for Chip/Clip/MPRA datasets
kchu25/GreedyAlign.jl
kchu25/kchu25.github.io
research
kchu25/MatrixMerge.jl
Using a population of profiles to approximate the real motifs
kchu25/MOODS
MOODS: Motif Occurrence Detection Suite
kchu25/RBPmotifsCore.jl
kchu25/SeqLogo.jl
render position weight matrices for DNA or RNA motifs
kchu25/SimulateMotif.jl
kchu25/Sparse-Index-Tracking
Simple implementation to solve the sparse financial index tracking problem with ADMM
kchu25/tensor-methods
Tensor decomposition for (symmetric/asymmetric tensor power iterations) for some latent variable models
kchu25/useful_stuff
kchu25/VisualizeMotifs.jl
kchu25/wustl-latex-dissertation-template
LaTeX disseration and thesis template for The Graduate School at Washington University in St. Louis.