Pinned Repositories
bigquery-utils
Useful scripts, udfs, views, and other utilities for migration and data warehouse operations in BigQuery.
gatk
GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses
GATK-CaseStudy
GATK Variant Calling Workflow using Galaxy, CWL and Cpipe
git2pdf
Print physical Kanban cards from your GitHub issues, and stick that sweet stuff on your office wall
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
mutect
MuTect -- Accurate and sensitive cancer mutation detection
kcibul's Repositories
kcibul/mutect
MuTect -- Accurate and sensitive cancer mutation detection
kcibul/bigquery-utils
Useful scripts, udfs, views, and other utilities for migration and data warehouse operations in BigQuery.
kcibul/gatk
GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses
kcibul/GATK-CaseStudy
GATK Variant Calling Workflow using Galaxy, CWL and Cpipe
kcibul/git2pdf
Print physical Kanban cards from your GitHub issues, and stick that sweet stuff on your office wall
kcibul/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
kcibul/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
kcibul/ivar
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
kcibul/modules
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kcibul/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
kcibul/THetA
Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. Please note that the latest release is now called THetA2.