Pinned Repositories
CodeClub
A weekly gathering of bioinformaticians to discuss new methods, build public code, and foster community.
workshops
workshops_UW_Seattle
2021-04-02-r-ladies-seattle-online
kdillmcfarland.github.io
Personal website
kimma
Kinship In Mixed Model Analysis of RNA-seq
micro_ecol
Scripts used in the analysis of amplicon microbiota data in R
presentations
sliding_windows
Bash script to create sliding windows from fasta files
workshops_UW_Madison
Files associated with microbiome workshops at the Bioinformatics Resource Center (BRC) at the U. of Wisconsin-Madison
kdillmcfarland's Repositories
kdillmcfarland/2021-04-02-r-ladies-seattle-online
kdillmcfarland/workshops_UW_Madison
Files associated with microbiome workshops at the Bioinformatics Resource Center (BRC) at the U. of Wisconsin-Madison
kdillmcfarland/sliding_windows
Bash script to create sliding windows from fasta files
kdillmcfarland/micro_ecol
Scripts used in the analysis of amplicon microbiota data in R
kdillmcfarland/R_bioinformatic_scripts
R scripts related to bioinformatic analyses. See https://github.com/BIGslu for most recent versions
kdillmcfarland/bash_bioinformatic_scripts
Bash shell scripts related to bioinformatic analyses
kdillmcfarland/GS01
Analyses associated with "Diet influences early microbiota development in dairy calves without long-term impacts on milk production"
kdillmcfarland/kdillmcfarland.github.io
Personal website
kdillmcfarland/kimma
Kinship In Mixed Model Analysis of RNA-seq
kdillmcfarland/presentations
kdillmcfarland/2020-02-18_tidy_tuesday
kdillmcfarland/Bioinformatics_Tools
Functions and scripts for sequence data analysis.
kdillmcfarland/blogdown_site
R-Ladies Seattle Site
kdillmcfarland/Bloom_DillMcFarland_2020
Our wedding website
kdillmcfarland/Curriculum_vitae
kdillmcfarland/EDUCE_desc
Analyses associated with "An integrated, modular approach to teaching data science in microbiology"
kdillmcfarland/FAST_method
Analyses associated with "Fecal Aliquot Straw Technique (FAST) allows for easy and reproducible subsampling: assessing interpersonal variation in trimethylamine-N-oxide (TMAO) accumulation"
kdillmcfarland/intro-curriculum-r
Custom curriculum for teaching R, the Unix Shell, & Git with an integrated workflow and reproducible research practices.
kdillmcfarland/kdillmcfarland
kdillmcfarland/mediation.fxn
kdillmcfarland/PICO
Analyses associated with "Oral probiotic combination of Lactobacillus and Bifidobacterium alters the gastrointestinal microbiota during antibiotic treatment for Clostridium difficile infection"
kdillmcfarland/rladies-seattle-organizing
Information for organizing R-Ladies Seattle
kdillmcfarland/slack-invite-automation
A tiny web application to invite a user into your slack team.
kdillmcfarland/test2
R-ladies workshop repo
kdillmcfarland/TestCollab
kdillmcfarland/TestRepo
kdillmcfarland/WLS
Analyses associated with "Close social relationships correlate with human gut microbiota composition"