Pinned Repositories
analysis_of_microbiome_community_data_in_r
This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
APS2019
Notes and files for the APS 2019 workshop on modeling techniques in R
APS_IntroR_2019
Introduction to R
audpc_example
An example analysis for calculating AUDPC using RMarkdown
Bioinformatics-Genome-Assembly-and-Analysis-Workshop-Pac-Bio-and-10x-Genomics-
Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016
FALCON
FALCON: experimental PacBio diploid assembler
jupyter
Jupyter metapackage for installation, docs and chat
minimap
Experimental tool to find approximate mapping positions between long sequences
NPDN_HTS_2024
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
kdpuri's Repositories
kdpuri/analysis_of_microbiome_community_data_in_r
This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
kdpuri/APS2019
Notes and files for the APS 2019 workshop on modeling techniques in R
kdpuri/APS_IntroR_2019
Introduction to R
kdpuri/audpc_example
An example analysis for calculating AUDPC using RMarkdown
kdpuri/Bioinformatics-Genome-Assembly-and-Analysis-Workshop-Pac-Bio-and-10x-Genomics-
Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016
kdpuri/FALCON
FALCON: experimental PacBio diploid assembler
kdpuri/jupyter
Jupyter metapackage for installation, docs and chat
kdpuri/minimap
Experimental tool to find approximate mapping positions between long sequences
kdpuri/NPDN_HTS_2024
kdpuri/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
kdpuri/poppr
An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
kdpuri/Reproducible-science-in-R
This site provides information on conducting reproducible science using the R language.
kdpuri/ReproducibleScienceInR
kdpuri/RNA-Seq-Workshop-Library-Preparation-and-Introduction-to-Data-Analysis
RNA-Seq Workshop: Library Preparation and Introduction to Data Analysis
kdpuri/SARTools
Statistical Analysis of RNA-Seq Tools
kdpuri/viral-ngs
Viral genomics analysis pipelines
kdpuri/WdStar
Multivariate Welch ANOVA