kedhammar
Bioinformatician in the applications development team at the @NationalGenomicsInfrastructure, part of @SciLifeLab in Stockholm.
@SciLifeLab @NationalGenomicsInfrastructure Stockholm, Sweden
Pinned Repositories
anglerfish
Anglerfish - Nanopore reads from Illumina libraries
bachelors_thesis
demultiplex
Demultiplexing pipeline for sequencing data
flowcell_parser
Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output
genologics
Python interface to the GenoLogics LIMS server via its REST API.
genomeassembler
genomics-status
Tornado server for tracking samples at NGI Stockholm
masters_thesis
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-core-tools
Python package with helper tools for the nf-core community.
kedhammar's Repositories
kedhammar/anglerfish
Anglerfish - Nanopore reads from Illumina libraries
kedhammar/bachelors_thesis
kedhammar/demultiplex
Demultiplexing pipeline for sequencing data
kedhammar/flowcell_parser
Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output
kedhammar/genologics
Python interface to the GenoLogics LIMS server via its REST API.
kedhammar/genomeassembler
kedhammar/genomics-status
Tornado server for tracking samples at NGI Stockholm
kedhammar/masters_thesis
kedhammar/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
kedhammar/nf-core-tools
Python package with helper tools for the nf-core community.
kedhammar/scilifelab_epps
A collection of Genologics Clarity LIMS EPPs used at Scilifelab.
kedhammar/seqinspector
(hopefully nf-core) pipeline to inspect your sequences
kedhammar/TACA
Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm
kedhammar/test-datasets
Test data to be used for automated testing with the nf-core pipelines