keeble/gda-ispyb-api

Library for writing acquisition metadata into an ISPyB database

GDA ISPyB API

This is a Java library for accessing a Diamond-flavour ISPyB database. It's designed for server-side-only usage, utilising stored procedures to access the database tables. A key benefit of this apporach is the ability to modify the behaviour of the library methods without downtime and without building and deploying a new version of the library itself. A simple change to a stored procedure is very quick and runs in a transaction without disrupting access to the database.

The stored procedures are maintained in a separate repository: ispyb-database.

Documentation

The javadocs are currently hosted at https://alfred.diamond.ac.uk/documentation/javadocs/gda-ispyb-api/.

Examples

For example usage, see the integration tests, e.g. PlateIntegrationTest.

Tests

To create the database user, run e.g. these SQL commands:

CREATE USER maven@localhost IDENTIFIED BY 'password_here';

GRANT SELECT, INSERT, UPDATE, DELETE, CREATE, DROP, REFERENCES, INDEX, ALTER, CREATE TEMPORARY TABLES, LOCK TABLES, EXECUTE, CREATE VIEW, SHOW VIEW, CREATE ROUTINE, ALTER ROUTINE, EVENT, TRIGGER ON `maven\_%`.* TO 'maven'@'localhost';

To build and test the JARs:

mvn -Dispyb.url={jdbc_url} -Dispyb.user={user} -Dispyb.pw={password} -Dispyb.host={host} package

Example:

mvn -Dispyb.url='jdbc:mariadb://localhost:3306' -Dispyb.user=maven -Dispyb.pw='password_here' -Dispyb.host=localhost package

To run a particular test class:

mvn -Dispyb.url={jdbc_url} -Dispyb.user={user} -Dispyb.pw={password} -Dispyb.host={host} -Dtest={TestClassName} test

To generate javadocs:

mvn -Dispyb.url={jdbc_url} -Dispyb.user={user} -Dispyb.pw={password} -Dispyb.host={host} install

The javadocs will then appear in a folder called target/apidocs/.

Release

To release, use the script release.sh with the argument major, minor, or bugfix. This script will handle updating the version. The result will be added to GitHub as a release by Azure Pipelines.