docking_automation

How to run

python automatic_docking.py \
  -p sample/2hu4_A.pdb \
  -l sample/G39.smi \
  -o result.sdf
  • -p: protein file in PDB format
  • -l: ligand file in SMILES notation
    • Thus far a ligand file containing SINGLE ligand is only acceptable.
  • -o: output file path