Pinned Repositories
atSNP
High speed p-value computation for regulatory SNP detection using Motif information
BandNorm
Simple Normalization Method for single-cell Hi-C
FreeHiC
FreeHi-C pipeline for high fidelity Hi-C data simulation.
iFunMed
Integrative functional mediation: example and usage
mHiC
mlg
permseq
Prior-enhanced read mapping for ChIP-seq
scVI-3D
surf
The statistical utility for RBP functions (SURF)
surf-paper
This repository makes available the source code of our SURF paper(s).
keleslab's Repositories
keleslab/mHiC
keleslab/FreeHiC
FreeHi-C pipeline for high fidelity Hi-C data simulation.
keleslab/permseq
Prior-enhanced read mapping for ChIP-seq
keleslab/atSNP
High speed p-value computation for regulatory SNP detection using Motif information
keleslab/BandNorm
Simple Normalization Method for single-cell Hi-C
keleslab/mlg
keleslab/Muscle
keleslab/scVI-3D
keleslab/surf-paper
This repository makes available the source code of our SURF paper(s).
keleslab/AdaLiftOver
Adaptive LiftOver
keleslab/ChIPexoQual
An R package for statistical quality control of ChIP-exo/nexus data.
keleslab/Dozer
keleslab/iFunMed
Integrative functional mediation: example and usage
keleslab/mbasic
Matrix Based Analysis for State-space Inference and Clustering.
keleslab/mosaics
MOdel-based one and two Sample Analysis and Inference for ChIP-Seq
keleslab/surf
The statistical utility for RBP functions (SURF)
keleslab/BandNorm_and_scVI-3D_manuscript
Code for generating figures and tables from "Normalization and De-noising of Single-cell Hi-C Data with BandNorm and scVI-3D"
keleslab/ChIPexoQualExample
Example data for the ChIPexoQual pacakge
keleslab/ChIPUtils
A package with basic utilities for ChIP analysis (both ChIPseq and ChIPexo)
keleslab/dpeak
High resolution identification of protein binding sites using PET and SET ChIP-Seq and ChIP-exo data
keleslab/ELECT
keleslab/explore-scRNA-seq
explore-scRNA-seq
keleslab/GEEES
GEEES: Inferring Cell-specific Gene-Enhancer Interactions from Multi-modal Single Cell Data
keleslab/INCA
keleslab/INCAData
keleslab/INFIMA
Integrative Fine-mapping with Model Organism Multi-Omics Data
keleslab/INFIMA-paper
The source codes for the INFIMA paper
keleslab/MuDCoD
MuDCoD: Multi-subject Dynamic Community Detection
keleslab/scRNAzirf
This repository contains the code base for zero inflated random forests.
keleslab/Segvis
Coverage plots from bam files for a given set of coordinates (and MORE).