GCluster: graph-based clustering
library(devtools)
install_github("CBIIT-CGBB/GCluster")
GCluster(dat=dat, wt=wt) and plot a graph removed edges by weights
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/02do_GCluster03_1.png)
R codes R codes
Clustering with weight and Clustering with k number
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/04do_GCluster06.png)
R codes R codes
Clustering with k means or with minimum spanning tree plot
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/05do_GCluster07.png)
R codes R codes
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/06do_GCluster08.png)
R codes
Cluster with several algorithms and cluster cartoon plot
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/08do_GCluster11.png)
R codes R codes
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/09do_GCluster12.png)
R codes
Cluster probabilities by simulation
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/10do_GCluster13.png)
R codes
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/11do_hcGCluster.png)
R codes
Cluster trajectory analysis
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/12do_tjGCluster4_2.png)
R codes
Cluster tree analysis (dynamic cluster analysis)
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/13cluster_tree_plot.png)
R codes for generating clusters from k=2 to k=30
R codes for plotting
Convert image to digital (generate complex data sets for cluster algorithm evaluation)
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/i2d/02do_GCluster04_1.png)
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/i2d/02do_GCluster04_3.png)
R codes R codes
Convert the image (top) to digital (bottom plot)
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/i2d/01_3_top_i2d.png)
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/i2d/01_3_bt_i2d.gif)
R codes R codes R codes
![](https://raw.githubusercontent.com/kevinluolk/GCluster/master/examples/i2d/04do_3d_U.gif)
R codes