Pinned Repositories
btree
cs3171 deliverable 4. A BTree with bi-directional iterators.
cuda
Haskell FFI bindings to CUDA
hfx
Accelerated cross-correlation based identification of protein sequences
home-settings
linux settings in home directory
laundry_app
multiGPU
Haskell implementation of NVIDIA's simpleMultiGPU example using the cuda package
six-degrees
cs3171 deliverable 1. Implementation of the six degrees of Kevin Bacon game.
small-query-database
cs3171 deliverable 3. Small query-able database using templates.
SMatrix
cs3171 deliverable 2. Sparse Matrix class
kevyin's Repositories
kevyin/home-settings
linux settings in home directory
kevyin/akka-book-wyatt
Work through of Akka Concurrency
kevyin/laundry_app
kevyin/bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
kevyin/coocurrence-streams
Calculate coocurrence, implemented using itertools streams
kevyin/cutadapt
Cutadapt removes adapter sequences from sequencing reads
kevyin/Dark_and_Camouflaged_genes
kevyin/DASCRUBBER-wrapper
Wrapper script for easier read scrubbing with DASCRUBBER
kevyin/drmaa-pbs
DRMAA PBS Java API, using command executions like qsub and qstat
kevyin/fast-cpp-csv-parser
fast-cpp-csv-parser
kevyin/flowcraft
A Nextflow pipeline assembler for genomics :whale::package:
kevyin/gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
kevyin/GroopM
Metagenomic binning suite
kevyin/interop
C++ Library to parse Illumina InterOp files
kevyin/intervaltree
a minimal C++ interval tree implementation
kevyin/nbnfinder
Helps you look for properties on the market with NBN
kevyin/ngsane
Analysis Framework for Biological Data from Hight Throughput Experiements
kevyin/pbs-java-api
PBS Java API
kevyin/pipelines-api-examples
Examples for the Google Genomics Pipelines API.
kevyin/quickhist
quickly plot a histogram on the CLI
kevyin/sitta
So It's Time To Analyse
kevyin/snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
kevyin/sunny
helpful tools
kevyin/truvari
Structural variant comparison tool for VCFs
kevyin/Unicycler
hybrid assembly pipeline for bacterial genomes
kevyin/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
kevyin/vg
tools for working with genome variation graphs
kevyin/wdl
Workflow Description Language - Specification and Implementations
kevyin/wdl_pipeline
development location for a wdl based germline pipeline with scatter gather parallelization
kevyin/WFA
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment