/FishBoutClustering

freemoving and headFixation zebrafish bout clustering

Primary LanguageMATLAB

1.generate basic data: including bout detection, angle data, angle, radius, eyeConvergence of each bout, etc.
2.generate bout kinematic parameters whose name is at getEnumeratorBoutKinematicParams.m
3.generate frequency domain feature
(the whole set of feature including 2 and 3 is indicated in getEnumeratorBoutKinematicParams_more.m)
4.tsne and watershed, reassignment, etc.
5.evaluation
6.bout map and application to new data