This repository includes code for SEPP.
Each of these related tools have their own README files README.SEPP.md.
- SEPP stands for "SATe-enabled phylogenetic placement", and addresses the problem of phylogenetic placement of short reads into reference alignment and trees.
SEPP is under active research development at UTCS by the Warnow Lab (and especially with her PhD students Siavash Mirarab and Nam Nguyen). Please report any errors to Siavash Mirarab (smirarab@gmail.com) and Nam Nguyen (namphuon@cs.utexas.edu).