Pinned Repositories
autobids
Automated Dicom to BIDS and pipelines using compute canada
bids-tutorial
Tutorial on BIDS - Methods Lunch Feb 12
hippunfold
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
Khanlab_Tutorials
labelmerge
Merge label maps
mp2rage_correction
BIDS App for correction of residual B1 in MP2RAGE based on Sa2RAGE (code from JP Marques)
neuroglia-helpers
Helper and wrapper scripts for using Singularity locally and on compute canada
scattr
BIDS app for structural connectivity between targeted regions
snakebids
Snakemake + BIDS
tar2bids
Khan Computational Imaging Lab's Repositories
khanlab/bids-tutorial
Tutorial on BIDS - Methods Lunch Feb 12
khanlab/qsm_sstv
BIDS app for single step total variation QSM processing of Siemens 7T data
khanlab/prepT2space
preprocessing for 7T 3D T2 SPACE data
khanlab/atlas_deepbrain7T
khanlab/BIDS
khanlab/bids-validator
Validator for the Brain Imaging Data Structure
khanlab/cctools
Tools for monitoring jobs etc on compute canada systems
khanlab/cfmm-bids
Tools for dicom-server retrieval, tarballing and conversion to bids
khanlab/continuous_max_flow_9.4T
khanlab/core
khanlab/datalad
khanlab/dicom_anonymization
khanlab/distortion_pipeline
khanlab/docker-dcm4che
khanlab/extractCMRRPhysio
extractCMRRPhysio in python.https://github.com/CMRR-C2P/MB/blob/master/extractCMRRPhysio.m
khanlab/LandmarkRegistrationEnhanced
khanlab/neuroglia
khanlab/neuroglia-core-minc
Neuroglia-core (FSL,AFNI,ANTS) + minctools
khanlab/neurosingularity
Building, deploying, and running neuroimaging BIDS-apps on HPC (compute canada)
khanlab/prepare_test_data_for_tar2bids
khanlab/publish-demo
khanlab/singularity-ci
continuous integration (testing) container for Singularity images