kharchenkolab/dropEst

fatal error: api/BamMultiReader.h: No such file or directory

zezhuo opened this issue · 1 comments

Hi dropEst team,

I got an error with installation on ubuntu as follow. Any suggestion?

Regards,
Nelson

ot@ot:~/apt/dropEst/dropEst$ cmake && make
Usage

  cmake [options] <path-to-source>
  cmake [options] <path-to-existing-build>

Specify a source directory to (re-)generate a build system for it in the
current working directory.  Specify an existing build directory to
re-generate its build system.

Run 'cmake --help' for more information.

[ 11%] Built target DropTools
[ 12%] Building CXX object CMakeFiles/Estimation.dir/Estimation/CellsDataContainer.cpp.o
/home/ot/apt/dropEst/dropEst/Estimation/CellsDataContainer.cpp:8:10: fatal error: api/BamMultiReader.h: No such file or directory
 #include <api/BamMultiReader.h>
          ^~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
CMakeFiles/Estimation.dir/build.make:86: recipe for target 'CMakeFiles/Estimation.dir/Estimation/CellsDataContainer.cpp.o' failed
make[2]: *** [CMakeFiles/Estimation.dir/Estimation/CellsDataContainer.cpp.o] Error 1
CMakeFiles/Makefile2:105: recipe for target 'CMakeFiles/Estimation.dir/all' failed
make[1]: *** [CMakeFiles/Estimation.dir/all] Error 2
Makefile:140: recipe for target 'all' failed
make: *** [all] Error 2

Hi,
Please use cmake . instead of cmake