kharchenkolab/dropEst

Issues

• ram and threads

  #138 opened 5 months ago by Flu09
  1

• How are multimapping reads counted?

  #136 opened a year ago by rbeagrie
  3

• RNA velocity using exon matrix as spliced and intron + spanning as unspliced

  #123 opened 4 years ago by sarajimenez
  1

• Missing genes in count matrix

  #137 opened a year ago by rbeagrie
  1

• list of real barcodes for Drop-seq technology

  #135 opened 2 years ago by ste-depo
  1

• unable to parse out UMI

  #134 opened 2 years ago by liuyang218622
  0

• Barcode 'AAACCCATCTCCCAAT-1' has wrong length and WARNING: Can't find chromosome 'JH584301.1'

  #110 opened 4 years ago by BeyondMyPast228
  3

• CMake is looking for BAMTOOLS_ROOT/lib but BAMTOOLS creates lib64

  #128 opened 3 years ago by jjv5
  3

• Conda install does not include libbamtools

  #127 opened 3 years ago by jjv5
  1

• Error while loading shared libraries: libbamtools

  #130 opened 2 years ago by amufaamo
  1

• cmake command error?

  #131 opened 2 years ago by benjaminfang
  2

• Can dropEst run nadia platform? (12 bp cellbarcode + 8 bp UMI)

  #129 opened 2 years ago by amufaamo
  2

• Matrices for velocity analysis

  #126 opened 3 years ago by nicodemus88
  1

• DropEst for 10x 5'vdj data

  #108 opened 4 years ago by Zifeng-L
  4

• Way to integrate multiple files

  #125 opened 3 years ago by jinyoung5484
  0

• Wrong output of dropTag in SPLiT-seq mode

  #124 opened 3 years ago by realzhang
  1

• 10X v3 Unable to parse UMI

  #105 opened 4 years ago by namitc
  4

• CMake Error

  #94 opened 5 years ago by epiBioCore
  11

• Error in CorrectUmiSequenceErrors

  #122 opened 4 years ago by ZHIDIHUAYUAN
  0

• barcode has wrong length

  #121 opened 4 years ago by ZHIDIHUAYUAN
  2

• question about config

  #118 opened 4 years ago by kkamiii
  1

• what is meaning of 2nd UMI merge?

  #119 opened 4 years ago by kkamiii
  0

• wondering about merging steps

  #120 opened 4 years ago by kkamiii
  0

• bzip2 build and install

  #117 opened 4 years ago by haircell
  2

• function 'dataptr' not provided by package 'Rcpp'

  #115 opened 4 years ago by mhassan
  1

• bzip2 build and instal

  #116 opened 4 years ago by haircell
  0

• All CBs were filtered

  #114 opened 4 years ago by bettycatherine
  3

• Parsing of CIGAR

  #101 opened 4 years ago by chlee-tabin
  0

• bzip2 make -f Makefile-libbz2_so error

  #88 opened 4 years ago by reginawongg
  1

• DropSeq, no cells detected

  #93 opened 5 years ago by MingBit
  6

• ERROR: unable to parse out UMI in--tried all suggestion mentioned previously

  #99 opened 5 years ago by bony45
  0

• filtered cells are empty about indrop v2

  #106 opened 4 years ago by zoe106
  3

• Feasibility of including deduplicated alignments

  #109 opened 4 years ago by ijhoskins
  1

• KeyError: "tag 'CB' not present"

  #112 opened 4 years ago by kaplinserm
  2

• 10x.xml(45): expected =

  #98 opened 5 years ago by bony45
  1

• 10x V3 Chemistry

  #104 opened 4 years ago by aelias1
  2

• Add dropestr documentation

  #113 opened 4 years ago by VPetukhov
  1

• Estimating RNS Velocyto using Seurat

  #100 opened 4 years ago by sikh09
  0

• cmake "Could not find R" error

  #111 opened 4 years ago by bettycatherine
  10

• Droptag indrops v3

  #107 opened 4 years ago by kaplinserm
  2

• Barcodes file in XML

  #102 opened 4 years ago by aelias1
  1

• dropEst ERROR: unable to parse out UMI

  #97 opened 4 years ago by jhe2020
  4

• Does droptag read fastq.gz files?

  #103 opened 4 years ago by slowkow
  1

• fatal error: api/BamMultiReader.h: No such file or directory

  #96 opened 5 years ago by zezhuo
  1

• Dropest for 10x v3 chemistry

  #90 opened 5 years ago by dalhoomist
  2

• local installation?

  #95 opened 5 years ago by edroaldo
  2

• make test is failing

  #92 opened 5 years ago by samfux84
  2

• Filtered cells are empty

  #91 opened 5 years ago by yihming
  6

• Bzip download

  #89 opened 5 years ago by shaaaarpy
  0

• "Can't find chromosome" warning

  #87 opened 5 years ago by ajwilk
  4