kharchenkolab/dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
C++GPL-3.0
Issues
- 0
Invalid pointer
#86 opened - 8
Add support for stranded libraries?
#85 opened - 1
GetUmisDistribution hangs
#84 opened - 1
[help wanted] dropestr usage
#83 opened - 1
Readme DropSeq Protocol Missing
#82 opened - 3
- 6
SPLiT-seq V3 round1 barcode collapse
#80 opened - 4
Location of built images
#79 opened - 3
Future of dropEst
#78 opened - 5
- 1
cmake error to find the boost library
#76 opened - 1
dropest for Drop-Seq aligned, tagged bam
#75 opened - 1
- 0
DropEst and Cellranger3
#73 opened - 0
- 1
Loading 10X data for dropestr?
#71 opened - 3
problems with dropReport.Rsc
#70 opened - 3
- 5
Download example cell.counts.rds
#68 opened - 4
- 3
Error in UMI correction vignette
#66 opened - 10
- 2
- 8
Library Tag for indrop v3
#63 opened - 5
Question regarding the -V option output
#61 opened - 0
error for the droptag
#60 opened - 6
Running DropTag/est for SeqWell
#59 opened - 6
Running time for dropest program
#58 opened - 4
option to retain filtered cells?
#57 opened - 6
Difference between cm_raw and cm
#56 opened - 2
dropTag filtering out all reads
#55 opened - 12
errors when doing dropEst cmake. Help!!!
#54 opened - 2
Error: unable to parse out UMI
#53 opened - 3
Error with dropEst
#52 opened - 14
- 1
- 2
make error
#49 opened - 5
Use two fastq files for 10x in dropTag
#48 opened - 1
- 2
Zero Cells in final dropEst output
#46 opened - 5
Ld error when compiling with Cmake
#45 opened - 2
- 2
dropest error
#43 opened - 0
Specify bam output file name
#42 opened - 1
--merge-umi is not recognised
#41 opened - 1
bzip website down
#40 opened - 7
cmake .. && make error
#39 opened - 3
- 5
- 8
dropest "wrong quality length"
#35 opened