Pinned Repositories
INSPEcT
INSPEcT (INference of Synthesis, Processing and dEgradation rates from Transcriptomic data) RNA-seq data in time-course experiments or different conditions, with or without the support of nascent RNA data.
LowMACA
git version of LowMACA Bioconductor package to identify cancer mutation hotspots by consensus alignment and mutation piling over amino acidic residues of conserved domains (Pfam)
scripts
deconvTRAP
Code to deconvolve TRAP datasets from its input, with examples
download-align-count-from-sra
ubuntu based container with SRAtoolkit, Bowtie and RSEM installed
INSPEcT-shinyApps
collection of shiny apps to interact with INSPEcT results
periferal_nerve_injury
Bioinfo scripts for the analyses described in EXPERIMENTAL PROCEDURES section of "Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve" manuscript
rocker-bioc3.10-R3.6.3
Docker recipe to create RStudio with R 3.6.3, Bioconductor 3.10, and my favorite packages installed
rocker-bioc3.11-R4.0.3
Docker recipe to create RStudio with R 3.6.3, Bioconductor 3.11, and my favorite packages installed
scRNA_2024_mouse_glioma
Code and files to reproduce the analyses
ste-depo's Repositories
ste-depo doesn’t have any repository yet.