ste-depo

Pinned Repositories

• INSPEcT

  INSPEcT (INference of Synthesis, Processing and dEgradation rates from Transcriptomic data) RNA-seq data in time-course experiments or different conditions, with or without the support of nascent RNA data.

  Language:R31

• LowMACA

  git version of LowMACA Bioconductor package to identify cancer mutation hotspots by consensus alignment and mutation piling over amino acidic residues of conserved domains (Pfam)

  Language:R10

• scripts

  Language:R10

• deconvTRAP

  Code to deconvolve TRAP datasets from its input, with examples

  Language:R00

• download-align-count-from-sra

  ubuntu based container with SRAtoolkit, Bowtie and RSEM installed

  Language:Dockerfile00

• INSPEcT-shinyApps

  collection of shiny apps to interact with INSPEcT results

  Language:R00

• periferal_nerve_injury

  Bioinfo scripts for the analyses described in EXPERIMENTAL PROCEDURES section of "Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve" manuscript

  Language:Jupyter Notebook00

• rocker-bioc3.10-R3.6.3

  Docker recipe to create RStudio with R 3.6.3, Bioconductor 3.10, and my favorite packages installed

  Language:R00

• rocker-bioc3.11-R4.0.3

  Docker recipe to create RStudio with R 3.6.3, Bioconductor 3.11, and my favorite packages installed

  Language:R00

• scRNA_2024_mouse_glioma

  Code and files to reproduce the analyses

  Language:R00

ste-depo's Repositories