kheffah
Pathology resident physician at Northwestern University, with an MD from Cairo University and PhD from Emory University. I work in Computational Pathology.
Northwestern UniversityChicago, IL, USA
Pinned Repositories
HistomicsTK
A Python toolkit for pathology image analysis algorithms.
histolab
Library for Digital Pathology Image Processing
ExtendingRipleysK
Extending Ripley’s K-Function to Quantify Aggregation in 2-D Grayscale Images
Healthcare-Database-APIs
Tools for interaction with various healthcare databases, including CDC, chicagohealthatlas etc
StainTools
Tools for tissue image stain normalization and augmentation in Python 3. [python, scientific]
tensorflow_FCN8Workflow
BCSS
Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourcing enables convolutional segmentation of histology images. Bioinformatics. 2019. doi: 10.1093/bioinformatics/btz083
kheffah's Repositories
kheffah/ExtendingRipleysK
Extending Ripley’s K-Function to Quantify Aggregation in 2-D Grayscale Images
kheffah/bmi500
BMI 500: Introduction to Biomedical Informatics
kheffah/Histomics
Histomics analyses so far
kheffah/Install-OpenCV
shell scripts to install different version of OpenCV in different distributions of Linux
kheffah/NCA-python
Implementation of the NCA in python with scipy and numpy
kheffah/ten-rules
Ten simple rules for better figures
kheffah/tensorflow
Computation using data flow graphs for scalable machine learning
kheffah/tensorflow-deeplab-lfov
DeepLab-LargeFOV implemented in tensorflow