khl0798

Pinned Repositories

alab
Frank Alber's Lab Toolbox
Language:Python0 1 00
compgenr
Language:R1 1 00
EnMaSSe-Deployment
Deployment scripts for the EnMaSSe system
Language:Python1 1 00
GAPIT3
Genome Association Predict Integrate Tools
Language:R1 0 00
HLA-bind
Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
Language:Python1 1 00
MachineLearning
Machine Learning
Language:Jupyter Notebook1 1 00
macropy
Macros in Python: quasiquotes, case classes, LINQ and more!
Language:Python1 1 00
Project
Language:Matlab1 1 00
spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
Language:HTML0 0 00
SpatialTranscriptAnalysis
Language:R1 1 00

khl0798's Repositories

khl0798/GAPIT3
Genome Association Predict Integrate Tools
Language:R1 0 00
khl0798/SpatialTranscriptAnalysis
Language:R1 1 00
khl0798/spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
Language:HTML0 0 00
khl0798/awesome-CRISPR
List of software/websites/databases/other stuff for genome engineering
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khl0798/awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
Language:Python0 0
khl0798/BDA_course_Aalto
Bayesian Data Analysis course at Aalto
Language:HTML0 0
khl0798/Crispr
CRISPR/Cas9 guide RNA Design
Language:Perl0 0
khl0798/CRISPR_2022
Codes for CRISPR paper
Language:R0 0
khl0798/crisprseq
[Under construction] A pipeline for all crispr analyses
Language:Nextflow0 0
khl0798/demultiplex
Versatile FASTA/FASTQ demultiplexer.
Language:Python0 0
khl0798/DUBStepR
Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data
Language:R0 0
khl0798/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
khl0798/harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
Language:R0 0
khl0798/homemade-machine-learning
🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained
Language:Jupyter Notebook0 0
khl0798/illumina-utils
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
Language:Python0 0
khl0798/LVIS_pipeline
Compile lentiviral vector integration sites from sequencing pipeline
khl0798/Machine-Learning
:zap:机器学习实战（Python3）：kNN、决策树、贝叶斯、逻辑回归、SVM、线性回归、树回归
Language:Python0 0
khl0798/ml4calibrated450k
This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estimating class probabilities for personalized cancer diagnostics on DNA methylation microarray data"
Language:R0 0
khl0798/Python-for-Bioinformatics
Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data especially raw NGS data.
Language:Jupyter Notebook0 0
khl0798/python-machine-learning-book
The "Python Machine Learning (1st edition)" book code repository and info resource
Language:Jupyter Notebook0 0
khl0798/sanbomics_scripts
scripts and notebooks from sanbomics
Language:Jupyter Notebook0 0
khl0798/scMET
Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
Language:R0 0
khl0798/SpatialInferCNV
Clone Calling from Visium Spatial Transcriptomics of Cancer samples
Language:HTML0 0
khl0798/T-LOC
Language:R0 0
khl0798/TargetSequence
khl0798/test_1
1 0
khl0798/test_copilot
1 0
khl0798/Transposon-insertion-site-identification
transposon insertion site identified from raw fastq file and transposon sequences, using local alignment for identification.
0 0
khl0798/wgbs-pipeline
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
Language:Python0 0
khl0798/word_report_template_20230423
Language:R1 0