khsjh

Pinned Repositories

• MACS

  MACS -- Model-based Analysis of ChIP-Seq

  Language:Cython695270

• HiC-Pro

  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

  Language:Python375181

• ArchR

  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

  Language:R365129

• Higashi

  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph

  Language:Jupyter Notebook749

• scHiCExplorer

  Single-cell Hi-C data analysis toolbox

  Language:Python232

• Fast-Higashi

  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition

  Language:Jupyter Notebook164

• SHARE-seq-alignmentV2

  Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2

  Language:Python117

khsjh's Repositories