Pinned Repositories
.tmux
🇫🇷 Oh my tmux! My self-contained, pretty & versatile tmux configuration made with ❤️
Amethyst
Automatic tiling window manager for macOS à la xmonad.
AnnotSV
Annotation and Ranking of Structural Variation
astral
Python calculations for the position of the sun and moon.
BALSAMIC
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
battenberg
Battenberg R package for subclonal copynumber estimation
Blacklist
Application for making ENCODE Blacklists
breakdancer
SV detection from paired end reads mapping
cgpBattenberg
Battenberg algorithm and associated implementation script
MultiSV
A tool to identify Structural Variants in Multiple populations
khurrammaqbool's Repositories
khurrammaqbool/Amethyst
Automatic tiling window manager for macOS à la xmonad.
khurrammaqbool/BALSAMIC
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
khurrammaqbool/battenberg
Battenberg R package for subclonal copynumber estimation
khurrammaqbool/CNVpytor
a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
khurrammaqbool/cyvcf2
cython + htslib == fast VCF and BCF processing
khurrammaqbool/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
khurrammaqbool/dotfiles-1
A collection of my personal dotfiles
khurrammaqbool/ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
khurrammaqbool/genome-spy
A GPU-accelerated toolkit and visualization grammar for genomic (and other) data
khurrammaqbool/gens
khurrammaqbool/modern-unix
A collection of modern/faster/saner alternatives to common unix commands.
khurrammaqbool/mongo
The MongoDB Database
khurrammaqbool/msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
khurrammaqbool/ohmyzsh
🙃 A delightful community-driven (with 2,000+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.
khurrammaqbool/powerline
Powerline is a statusline plugin for vim, and provides statuslines and prompts for several other applications, including zsh, bash, tmux, IPython, Awesome and Qtile.
khurrammaqbool/PyVCF
A Variant Call Format reader for Python.
khurrammaqbool/raredisease
Call and score variants from WGS/WES of rare disease patients.
khurrammaqbool/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
khurrammaqbool/scout
VCF visualization interface
khurrammaqbool/SVDB
structural variant database software
khurrammaqbool/the-book-of-secret-knowledge
A collection of inspiring lists, manuals, cheatsheets, blogs, hacks, one-liners, cli/web tools and more.
khurrammaqbool/tmux
tmux source code
khurrammaqbool/tpm
Tmux Plugin Manager
khurrammaqbool/vcfpy
Python 3 library with good support for both reading and writing VCF
khurrammaqbool/Vundle.vim
Vundle, the plug-in manager for Vim
khurrammaqbool/wttr.in
:partly_sunny: The right way to check the weather
khurrammaqbool/YouCompleteMe
A code-completion engine for Vim
khurrammaqbool/zsh-autosuggestions
Fish-like autosuggestions for zsh
khurrammaqbool/zsh-history-substring-search
🐠 ZSH port of Fish history search (up arrow)
khurrammaqbool/zsh-syntax-highlighting
Fish shell like syntax highlighting for Zsh.