khzhu

Bioinformatics programmer who loves coding and data mining.

NYULangoneNew York

Pinned Repositories

cbio-tools
Language:Python00
ion_automation
The automated workflow for processing Oncomine Precision Assay NGS sequencing data
Language:Python01
matchapi
Language:Java00
webapi
Language:Java00
LG-PACT
NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.
Language:Nextflow80
automation-scripts
repo for automation python/R scripts
Language:Python00
cbioportal
cBioPortal for Cancer Genomics
Language:Java00
cbioportal-frontend
React Frontend of cBioPortal :tada:
Language:TypeScript00
ConsensusCruncher
ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.
Language:Python00
datahub
00

khzhu's Repositories

khzhu/omics-workflows
Computational analysis workflows for Omics data utilizing open-source tools
Language:WDL
khzhu/ion_automation
The automated workflow for processing Oncomine Precision Assay NGS sequencing data
Language:Python1
khzhu/cbio-tools
Language:Python
khzhu/Trimmomatic
khzhu/enrichplot
Visualization of Functional Enrichment Result
khzhu/GenVisR
Genome data visualizations
Language:R
khzhu/cbioportal
cBioPortal for Cancer Genomics
Language:Java
khzhu/datahub
khzhu/cbioportal-frontend
React Frontend of cBioPortal :tada:
khzhu/matchapi
Language:Java
khzhu/webapi
Language:Java
khzhu/ConsensusCruncher
ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.
Language:Python
khzhu/phylowgs
Application for inferring subclonal composition and evolution from whole-genome sequencing data.
Language:Python
khzhu/matchminer-engine
Match genomic profiles to clinical trials
Language:Python