kibet-gilbert
MSc Mol. Bio. & Bioinformatics Bioinformatics & Computational Biology : [[Meta|Phylo]Gen]Omics | ML for Bioinformatics Open Science Bash|R|Python|Nextflow
International Livestock Research InstituteNairobi, Kenya
Pinned Repositories
16SrRNA_Meta-analysis_H3BioNet_2016SOP
!!!STILL UNDER DEVELOPMENT!!! This is a workflow tutorial of analysis of 16S-rRNA based on the H3BioNet standard operating procedure. It is incomplete for now.
bioconda-recipes
Conda recipes for the bioconda channel.
co1_metaanalysis
This a CO1 barcodes meta-analysis project repository. The project targets to conduct phylogenetic, biodiversity and phylogeographic analysis of CO1 barcodes sequences in BOLD systems from East African Arthropods
CODATA-RDA-Advanced-Bioinformatics-2019
Material for the Advanced Bioinformatics Workshop Trieste 2019
covid
This Repo hosts SARS-CoV-2 genome sequencing, variant calling and assembly scripts. It relies on other cloned repositories and singularity images adapted from other tools and workflows.
EANBiT_MNGS
Metagenome assembly and annotation
OpenScienceKE
Page for Open Science in Bioinformatics Worskop on 9th and 10th August, 2018.
Preprints_and_Publishing_in_Life_Biomedical_Sciences
This is a ten hour course on Preprint usage in life or biomedical sciences. It has been created by ASAPbio 2020 fellows group with the support of ASAPbio.
Python4Bioinformaticskg
Lecture resources for Python for Bioinformatics EANBiT course.
pasta
PASTA (Practical Alignment using SATe and Transitivity)
kibet-gilbert's Repositories
kibet-gilbert/Preprints_and_Publishing_in_Life_Biomedical_Sciences
This is a ten hour course on Preprint usage in life or biomedical sciences. It has been created by ASAPbio 2020 fellows group with the support of ASAPbio.
kibet-gilbert/16SrRNA_Meta-analysis_H3BioNet_2016SOP
!!!STILL UNDER DEVELOPMENT!!! This is a workflow tutorial of analysis of 16S-rRNA based on the H3BioNet standard operating procedure. It is incomplete for now.
kibet-gilbert/co1_metaanalysis
This a CO1 barcodes meta-analysis project repository. The project targets to conduct phylogenetic, biodiversity and phylogeographic analysis of CO1 barcodes sequences in BOLD systems from East African Arthropods
kibet-gilbert/covid
This Repo hosts SARS-CoV-2 genome sequencing, variant calling and assembly scripts. It relies on other cloned repositories and singularity images adapted from other tools and workflows.
kibet-gilbert/metagen
Nextflow scripts for custom metagenomic workflows
kibet-gilbert/bioconda-recipes
Conda recipes for the bioconda channel.
kibet-gilbert/CODATA-RDA-Advanced-Bioinformatics-2019
Material for the Advanced Bioinformatics Workshop Trieste 2019
kibet-gilbert/OpenScienceKE
Page for Open Science in Bioinformatics Worskop on 9th and 10th August, 2018.
kibet-gilbert/Python4Bioinformaticskg
Lecture resources for Python for Bioinformatics EANBiT course.
kibet-gilbert/Deepbinner
a signal-level demultiplexer for Oxford Nanopore reads
kibet-gilbert/fasta2genotype
Convert STACKS fasta to many genotype formats
kibet-gilbert/fieldbioinformatics
The ARTIC field bioinformatics pipeline
kibet-gilbert/Gilbert-Kibet
Personal website
kibet-gilbert/Installing-Augustus-with-manual-bamtools-installation-Ubuntu-16.04
This is a step by step guide on how to install latest version of Installing Augustus 3.3.1 (with manual bamtools installation)
kibet-gilbert/Introduction-to-Linux
This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.
kibet-gilbert/ipynbs
My jupyter notebooks
kibet-gilbert/jekyll-uno
Jekyll-Uno - a minimal, responsive theme for Jekyll based on Uno for Ghost
kibet-gilbert/mag
Assembly and binning of metagenomes
kibet-gilbert/markdown-here
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
kibet-gilbert/meta1
This repository host code used in the analysis workflow of sequences generated from shotgun metagenomics sequencing.
kibet-gilbert/nextclade
Viral genome alignment, clade assignment, mutation calling, and quality checks
kibet-gilbert/Pipelines_and_workflows
All information needed on creating bioinformatics pipleines and workflows
kibet-gilbert/ReproducibleResearchRStudio
This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.
kibet-gilbert/SARS-CoV-2-Data-Workflows
SARS-CoV-2 genomics surveillance work notebooks for data management and analysis.
kibet-gilbert/sars-cov-2-genomics-and-bioinformatics-2024
An open-source project for creating online courses, built by P2PU
kibet-gilbert/singularity
Repository with my singularity recipes hosted at Singularity Hub
kibet-gilbert/snakemake_training
kibet-gilbert/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
kibet-gilbert/Status-of-OpenScienceKE-LiteratureSearch
Scan online literature databases for status of Open Science in Kenya
kibet-gilbert/TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi