Pinned Repositories
pooled
Python toolkit for analysis of pooled, functional genetic screens (e.g., CRISPR, RNAi, ORF)
2019_material
Repository for labs/assignments from 2019
APMTH10
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
ATAC-STARR-seq
Scripts for analyzing ATAC-STARR data.
base-editor-screen-analysis
Analysis of screening data from base editor screens
be-validation-pipeline
Analysis pipeline for base editor validation experiments
beyondpractice
BIG_single_cell_rna_seq_workshop
repository for the single cell RNA-Seq workshop
bootcamp
Caltech Introduction to Programming for the Biological Science Bootcamp
kiddo18's Repositories
kiddo18/pooled
Python toolkit for analysis of pooled, functional genetic screens (e.g., CRISPR, RNAi, ORF)
kiddo18/YouTubeTutorials
kiddo18/GEARS
GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
kiddo18/tnt
Analysis code for Buckberry, Liu, Poppe, Tan et al. "Transient naive reprogramming corrects hiPS cells functionally and epigenetically"
kiddo18/TrackerSci_analysis
kiddo18/esm-variants
kiddo18/sanbomics_scripts
scripts and notebooks from sanbomics
kiddo18/be-validation-pipeline
Analysis pipeline for base editor validation experiments
kiddo18/PARPi_interactions
This contains the scripts to generate all figures in Simpson and Ling et al 2023.
kiddo18/2019_material
Repository for labs/assignments from 2019
kiddo18/gpp-computational-resources
Computational training resources for GPP R&D
kiddo18/single-cell_CRISPR
kiddo18/scScalpChromatin
kiddo18/ATAC-STARR-seq
Scripts for analyzing ATAC-STARR data.
kiddo18/DNMT1_eLife_2022
Code for DNMT1 paper
kiddo18/gnt
kiddo18/lisa2
kiddo18/dualgenomewide
All original code pertaining to the manuscript "Dual genome-wide coding and lncRNA screens in neural induction of induced pluripotent stem cells."
kiddo18/iBE
kiddo18/base-editor-screen-analysis
Analysis of screening data from base editor screens
kiddo18/cas9-variants-manuscript
kiddo18/organoid_regulomes
Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
kiddo18/SLR_BCA
kiddo18/RINNINFORMATICS_2021
Statistical and computational analysis of the human genome
kiddo18/Lab_2021
Repository for all the labs for Spring 2021
kiddo18/BIG_single_cell_rna_seq_workshop
repository for the single cell RNA-Seq workshop
kiddo18/applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
kiddo18/nature_bash
Example scripts demonstrating science at the command line.
kiddo18/CS50-AI
kiddo18/fastbook
The fastai book, published as Jupyter Notebooks