Pinned Repositories
kf-alignment-workflow
:microscope: Alignment workflow for Kids-First DRC
kf-api-dataservice
:file_cabinet: Primary API for interacting with the Kids First data
kf-api-fhir-service
🔥 FHIR Data Service for Kids First
kf-developer-handbook
📖 Handbook for all things development in Kids First
kf-lib-data-ingest
🏭 Kids First Data Ingest Library
kf-portal-ui
:bar_chart: The Kids First Data Resource Portal and Social Network User Interface
kf-rnaseq-workflow
:microscope: RNA-Seq workflow for Kids-First DRC
kf-somatic-workflow
:microscope: Somatic workflow for Kids-First
kf-ui-data-tracker
👨⚕️ An application to collect study data and report on study status
kf-ui-fhir-data-dashboard
💡📊 Prototype FHIR data dashboard - what's in my FHIR server?
kids-first's Repositories
kids-first/kf-portal-ui
:bar_chart: The Kids First Data Resource Portal and Social Network User Interface
kids-first/kf-somatic-workflow
:microscope: Somatic workflow for Kids-First
kids-first/kf-alignment-workflow
:microscope: Alignment workflow for Kids-First DRC
kids-first/kf-rnaseq-workflow
:microscope: RNA-Seq workflow for Kids-First DRC
kids-first/kf-api-fhir-service
🔥 FHIR Data Service for Kids First
kids-first/kf-jointgenotyping-workflow
:microscope: Joint genotyping workflow for Kids-First DRC
kids-first/kf-api-dataservice
:file_cabinet: Primary API for interacting with the Kids First data
kids-first/kf-lib-data-ingest
🏭 Kids First Data Ingest Library
kids-first/kf-utils-python
🛠 Collection of reusable Python utilities related to the Kids First project
kids-first/kf-key-management
:factory: Application for storing user api tokens from third party services.
kids-first/c2m2-submission-process
kids-first/kf-cbioportal-etl
Repository of scripts used to convert dataservice metadata and DRC processed data into cbio portal loading format.
kids-first/kf-tumor-workflow
kids-first/clovoc-ui-data-dashboard
kids-first/kf-api-study-creator
📂 Powers investigator-driven data staging. Backend for Data Tracker app
kids-first/kf-dev-single-cell-rna
kids-first/kf-germline-workflow
Repository for Germline CNV, SNV, and SV Tools and Workflows
kids-first/kf-longreads-workflow
This is a dev-to-production repo for the Kids First Long reads pipeline
kids-first/kf-annotation-tools
This repo contains commonly share annotation tools. Meant to be generally used as a git submodule for other variant calling workflows to centralize and simplify code development and maintainance.
kids-first/kf-api-arranger
:factory: a data-model aware GraphQL API that sits above an Elasticsearch cluster
kids-first/kf-api-portal-reports
📝 Generate reports based on queries built using the Kids First Portal
kids-first/kf-cavatica-public-app-publisher
This repo houses scripts and guidelines on publishing a CWL app as a public app on Cavtica
kids-first/kf-dataservice-tools
🧮 tools for interacting with the dataservice
kids-first/kf-lambda-member-update
This lambda consume events from sqs and update elasticsearch member index
kids-first/kf-persona
kids-first persona implementation
kids-first/kf-update-dbgap-consent
🛠 dbGaP sample consent status processor for the Kids First project
kids-first/Kids-First-Sentieon-Joint-Cohort-Genotyping-Workflow
Kids First and Sentieon collaboration to bring a relatively easy and affordable joint calling workflow to CAVATICA
kids-first/PacBio-HiFi-human-WGS-CWL
kids-first/riff
:construction: A Microservice for URL Shortening and sharing.
kids-first/rollcall
A service for managing indices and aliases in an elasticsearch cluster