Validation tabular output looks malformed
Opened this issue · 0 comments
fiendish commented
It's hard to know what to do with this output as a user. "Errors" and "Details" columns are nondescript. It also seems like these rows should be combined or something.
| type | result | description | errors | locations | details |
|---|---|---|---|---|---|
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP005A', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP005A'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP005A'}} |
{'SP005A': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP006', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP006'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP006'}} |
{'SP006': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP004A', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP004A'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP004A'}} |
{'SP004A': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP003B', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP003B'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP003B'}} |
{'SP003B': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP002B', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP002B'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP002B'}} |
{'SP002B': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP001A', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP001A'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP001A'}} |
{'SP001A': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP008B', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP008B'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP008B'}} |
{'SP008B': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP008A', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP008A'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP008A'}} |
{'SP008A': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP009A', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP009A'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP009A'}} |
{'SP009A': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP009B', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP009B'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP009B'}} |
{'SP009B': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP004B', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP004B'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP004B'}} |
{'SP004B': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP005B', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP005B'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP005B'}} |
{'SP005B': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP001B', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP001B'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP001B'}} |
{'SP001B': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP003A', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP003A'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP003A'}} |
{'SP003A': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP002A', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP002A'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP002A'}} |
{'SP002A': 'BIOSPECIMEN|ID'} |
| relationship | fail | Each BIOSPECIMEN|ID links to at least 1 GENOMIC_FILE|ID | ('SP007', []) | {'/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/family_and_phenotype.tsv': {'SP007'}, '/Users/kelmana/Documents/kids-first/kf-lib-data-ingest/my_study/ingest_package_1/output/ExtractStage/extract_config.tsv': {'SP007'}} |
{'SP007': 'BIOSPECIMEN|ID'} |