Pinned Repositories
cryo_fit
cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules
cryo_fit2
cryo_fit2 source codes, test files, live at .../phenix-xxxx/modules
3D-VQ-VAE-2
3D VQ-VAE-2 for high-resolution CT scan synthesis
3D_Scaffold
3DShape2VecSet
4D-CHAINS
4D-CHAINS software for protein NMR assignment
a-cnn
adaptivediffgrid_ex
AutoMicroED
kimdn's Repositories
kimdn/aitom
AI for tomography
kimdn/APPRAISE
Rank binders by structure modeling
kimdn/alphafoldv2.2.0
Open source code for AlphaFold.
kimdn/BioGPT
kimdn/CAPLA
CAPLA: improved prediction of protein-ligand binding affinity by a deep learning approach based on a cross-attention mechanism
kimdn/CASCADE
CAlculation of NMR using Deep LEarning
kimdn/cdeep3m2
Plug-and-Play deep learning for image segmentation of large-scale microscopy data
kimdn/DeePiCt
Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
kimdn/diffab
✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
kimdn/diffusion-point-cloud
:thought_balloon: Diffusion Probabilistic Models for 3D Point Cloud Generation (CVPR 2021)
kimdn/dssp
The DSSP building software
kimdn/GisSPA
kimdn/grip-tomo
docs: https://grip-tomo.readthedocs.io/en/latest/
kimdn/IgFold
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
kimdn/IsoNet
kimdn/KAIR
Image Restoration Toolbox (PyTorch). Training and testing codes for DPIR, USRNet, DnCNN, FFDNet, SRMD, DPSR, BSRGAN, SwinIR
kimdn/model-angelo
Automatic atomic model building program for cryo-EM maps
kimdn/NoiseTransfer2clean
The code for paper "Noise-Transfer2Clean: Denoising cryo-EM images based on noise modeling and transfer"
kimdn/OmegaFold
OmegaFold Release Code
kimdn/PASSerRank
kimdn/POPScomp
Solvent Accessible Surface Areas of Biomolecules and their Complexes
kimdn/ProDy
A Python Package for Protein Dynamics Analysis
kimdn/ProteinMPNN
Code for the ProteinMPNN paper
kimdn/ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
kimdn/psikit
psi4+RDKit
kimdn/RFDesign
Protein hallucination and inpainting with RoseTTAFold
kimdn/SFI-Swin
SFI-Swin: Symmetric Face Inpainting with Swin Transformer by Distinctly Learning Face Components Distributions https://arxiv.org/abs/2301.03130
kimdn/ShapeFormer
Official repository for the ShapeFormer Project
kimdn/therML
The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability
kimdn/unlocking-de-novo-antibody-design