Pinned Repositories
MU-analysis
Multi-unit analysis of Plexon recording data
Scanziani_Analysis_Code
code from Bass, Shawn, myself for data acquisition and analysis
Visual_Stimulus_Presentation
PsychStimController code from Scanziani lab for visual stimulus presentation
Acquisition2P_class
For managing 2P imaging datasets from preprocessing to activity trace extraction
anipose
🐜🐀🐒🚶 A toolkit for robust markerless 3D pose estimation
behaviorRig
Arduino code to control behavior rig
ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
chronux_v3
constrained-foopsi-1
Implementation of the constrained deconvolution spike inference algorithm in Matlab
Constrained_NMF
Python implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
kimerein's Repositories
kimerein/integrate-phys-and-beh
for analyzing behavior output and integrating with physiology data
kimerein/reach-behavior-analysis
automated reach analysis
kimerein/MU-analysis
Multi-unit analysis of Plexon recording data
kimerein/reachBehavior
analysis of reaching behavior
kimerein/sabatini-datajoint-pipeline
kimerein/tensor_regression
Pytorch functions for performing tensor regression
kimerein/k-glm
Sabatini GLM modified for Kim's data
kimerein/sabatinilab-glm
Generalized Linear Model implementation for use by Sabatini Lab
kimerein/Scanziani_Analysis_Code
code from Bass, Shawn, myself for data acquisition and analysis
kimerein/KR_Analysis_Toolbox
code from graduate school
kimerein/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
kimerein/tensor-demo
A quickstart guide to tensor decomposition
kimerein/reachingVidProcessing
Scripts to process videos of cued reaching behavior
kimerein/anipose
🐜🐀🐒🚶 A toolkit for robust markerless 3D pose estimation
kimerein/photometry
kimerein/reaching-behavior-rig
Behavior rig for forepaw reaching task
kimerein/sonifyBrain
for turning neural activity data into sound
kimerein/behaviorRig
Arduino code to control behavior rig
kimerein/chronux_v3
kimerein/twotone
An open-source data sonification web app
kimerein/openjpeg
Official repository of the OpenJPEG project
kimerein/leap
LEAP Estimates Animal Pose
kimerein/Visual_Stimulus_Presentation
PsychStimController code from Scanziani lab for visual stimulus presentation
kimerein/vStimController
Shawn's stimulus presentation code
kimerein/Psychtoolbox
Psychophysics toolbox
kimerein/Specgram_Code_from_Callaway_Rotation
spectrogram Gabor-Morlet wavelet analysis
kimerein/kim-calcium-imaging
Functions for analyzing 2P calcium imaging data
kimerein/Acquisition2P_class
For managing 2P imaging datasets from preprocessing to activity trace extraction
kimerein/ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
kimerein/Constrained_NMF
Python implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.