Pinned Repositories
umgc_capstonecourse_2022
General prokaryotic variant calling pipeline that uses Docker containers for ease of use.
geteilt
NARST workflow built in nextflow. Pulls paired short-read data from NCBI using SRRs, and runs through read metrics, coverage cutoff, assembly, and AR, plasmid, and point-mutation screening
messer
Post-assembly small plasmid recovery and size correction workflow for nanopore sequence data
Schtappe
Suite of nextflow pipelines created to support CDC's National Antimicrobial Resistance Surveillance Team's bioinformatics needs
stylo
Nanopore assembly workflow from basecalled reads to polished assembly plus assembly QC, metrics, and plasmid replicon detection
kimyoungw's Repositories
kimyoungw/umgc_capstonecourse_2022
General prokaryotic variant calling pipeline that uses Docker containers for ease of use.