kind-lab/mimic-fhir

Issues

• Invalid JSON

  #91 opened 6 months ago by johngrimes
  1

• Invalid SimpleQuantity elements within MedicationDispense

  #92 opened 6 months ago by johngrimes
  0

• Is complete version available for download?

  #87 opened 10 months ago by JHLiu7
  9

• LICENSE

  #89 opened 10 months ago by ewulczyn
  1

• mimiciv_ed.edstays referenced in fhir_patient.sql is not part of mimiciv 2.2?

  #84 opened 2 years ago by sebbarb
  2

• Look into passing bundles in parallel

  #25 opened 2 years ago by alexmbennett2
  3

• NamingSystem for identifiers

  #71 opened 2 years ago by alexmbennett2
  3

• Add provenance element

  #65 opened 2 years ago by alexmbennett2
  1

• Add resource narratives

  #64 opened 2 years ago by alexmbennett2
  1

• Bundling resources

  #9 opened 2 years ago by alexmbennett2
  2

• Fix argument parsing for py_mimic_fhir

  #58 opened 2 years ago by alistairewj
  1

• Limit in Observation Labs SQL

  #43 opened 2 years ago by hannesUlrich
  1

• Microbiology Updates

  #12 opened 2 years ago by alexmbennett2
  3

• Clean HAPI Server - Deleting old data on HAPI

  #27 opened 2 years ago by alexmbennett2
  1

• Pathling import of mimic-fhir resources

  #61 opened 2 years ago by alexmbennett2
  5

• Pull in transfers as location for encounters

  #39 opened 2 years ago by alexmbennett2
  7

• Terminology generation verification

  #19 opened 2 years ago by alexmbennett2
  1

• Use a different variable than "HOST" in env

  #57 opened 2 years ago by alistairewj
  1

• Update micro specimen codesystem

  #56 opened 2 years ago by alexmbennett2
  1

• How to handle lab results in comments

  #41 opened 2 years ago by alexmbennett2
  5

• Encounter References Hosp v ICU

  #7 opened 2 years ago by alexmbennett2
  2

• Refactor Bundler

  #37 opened 2 years ago by alexmbennett2
  1

• Update medication mapping

  #51 opened 2 years ago by alexmbennett2
  1

• Canonical ValueSet reference in CodeSystem

  #53 opened 2 years ago by alexmbennett2
  7

• Experience on the Quickstart

  #52 opened 2 years ago by hannesUlrich
  3

• Update create_fhir_tables with fhir_etl

  #48 opened 2 years ago by alexmbennett2
  1

• Add comments to ObservationMicroSusc and ObservationMicroTest

  #50 opened 2 years ago by alexmbennett2
  1

• QA patient ethnicity/race

  #47 opened 2 years ago by alexmbennett2
  1

• Micro specimen add type

  #49 opened 2 years ago by alexmbennett2
  1

• Test ValueSet reference and expansion

  #44 opened 2 years ago by alexmbennett2
  1

• Integrate terminology script into py_mimic_fhir

  #30 opened 2 years ago by alexmbennett2
  0

• Add CLI functionality to py_mimic_fhir

  #33 opened 2 years ago by alexmbennett2
  2

• Review lab tables for more data to pull into fhir

  #38 opened 2 years ago by alexmbennett2
  1

• ICU observation warning

  #42 opened 2 years ago by alexmbennett2
  2

• Calculate largest bundle, use as benchmark in tests

  #24 opened 2 years ago by alexmbennett2
  4

• Catch failed bundles and write out to file

  #22 opened 2 years ago by alexmbennett2
  3

• Test demo data validate and export

  #29 opened 2 years ago by alexmbennett2
  1

• Timing estimate for full fhir generation in postgres

  #31 opened 2 years ago by alexmbennett2
  3

• Confirm bundles validating codes

  #23 opened 2 years ago by alexmbennett2
  1

• Update fhir_etl.subjects with demo script

  #28 opened 2 years ago by alexmbennett2
  1

• Java validator against local files

  #34 opened 2 years ago by alexmbennett2
  0

• Export patient bundles (vs resources)

  #32 opened 2 years ago by alexmbennett2
  0

• Pull in demo subjects

  #26 opened 2 years ago by alexmbennett2
  0

• Java validator testing switch

  #14 opened 3 years ago by alexmbennett2
  3

• Update terminology to match mimic names

  #20 opened 2 years ago by alexmbennett2
  0

• mimic-profiles

  #13 opened 2 years ago by alexmbennett2
  0

• ValueSets/fhir_etl needed

  #11 opened 2 years ago by alexmbennett2
  0

• Server Tests

  #8 opened 2 years ago by alexmbennett2
  1

• Validate codes against custom valuesets

  #10 opened 2 years ago by alexmbennett2
  0

• Versioning Terminology based on MIMIC

  #18 opened 2 years ago by alexmbennett2
  3