kiranpatil222

Pinned Repositories

SCSA
SCSA: cell type annotation for single-cell RNA-seq data
Language:Python82 4 3515
wf-artic
ARTIC SARS-CoV-2 workflow and reporting
Language:Nextflow47 11 10234
wf-bacterial-genomes
Small variant calling for haploid samples
Language:Python25 4 458
Fastq-Reads-simulator
Language:Perl0 0 00
Imagene
ImaGene: A multi-omic ML/AI software with guided operational reports and supporting files
Language:HTML0 0 00
augur
Pipeline components for real-time phylodynamic analysis
Language:Python268 31 689129
avian-flu
Nextstrain build for avian influenza viruses
Language:Python19 19 287
docs.nextstrain.org
Umbrella documentation project for Nextstrain
Language:Python18 15 7513
ncov
Nextstrain build for novel coronavirus SARS-CoV-2
Language:Python1.4k 77 419403
nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Language:Rust219 20 45758

kiranpatil222's Repositories

kiranpatil222/Fastq-Reads-simulator
Language:Perl0 0 00
kiranpatil222/Imagene
ImaGene: A multi-omic ML/AI software with guided operational reports and supporting files
Language:HTML0 0 00