Pinned Repositories
antimony-automata
Conway's Game of Life in Antimony
CCLE-ssGSEA
CCR
evoMEG: evolutionary algorithm-based Model Ensemble Generation
DrosophilaOlfaction
evoMEG
evoMEG: evolutionary algorithm-based Model Ensemble Generation
metaMEG
metaMEG: metabolic pathway Model Ensemble Generation
netplotlib
A simple package for visualizing and analyzing reaction network models
pySBOL
SWIG-Python wrappers implementing SBOL 2.2
roadrunner
libRoadRunner: A high-performance SBML simulator
tellurium
Python Environment for Modeling and Simulating Biological Systems
kirichoi's Repositories
kirichoi/evoMEG
evoMEG: evolutionary algorithm-based Model Ensemble Generation
kirichoi/CCR
evoMEG: evolutionary algorithm-based Model Ensemble Generation
kirichoi/DrosophilaOlfaction
kirichoi/netplotlib
A simple package for visualizing and analyzing reaction network models
kirichoi/antimony-automata
Conway's Game of Life in Antimony
kirichoi/CCLE-ssGSEA
kirichoi/centos-devtools
kirichoi/metaMEG
metaMEG: metabolic pathway Model Ensemble Generation
kirichoi/dockcross
Cross compiling toolchains in Docker images
kirichoi/DrosophilaPerception
kirichoi/FqClustering
kirichoi/kirichoi.github.io
kirichoi/libSBML-dependencies
Set of dependencies for compiling libSBML
kirichoi/libSBOL
C++ implementation of libSBOL 2.0.0.
kirichoi/moonwalk
A fast & minimal Jekyll blog theme with clean dark mode
kirichoi/NSSR
Network Search Space Reduction Algorithm
kirichoi/PolymerConnectome
kirichoi/pySME
Python script to run R SME package
kirichoi/raptor
Redland Raptor RDF syntax library
kirichoi/roadrunner
libRoadRunner: A high-performance SBML simulator
kirichoi/seaborn
Statistical data visualization using matplotlib
kirichoi/simplesbml
Python package for building SBML models without needing to use libSBML.
kirichoi/spyder-opensbml
openSBML plugin for Spyder 3.0+
kirichoi/spyder-ratelaw
Tellurium RateLaw plugin for Spyder 3.0+
kirichoi/spyder-teimport
Tellurium Import plugin for Spyder 3.0+
kirichoi/spyderplugins
Plugins for Spyder IDE
kirichoi/tellurium
IDE to model and simulate biochemical & synthetic biology systems
kirichoi/telPlugins
Plugins for Telluirum
kirichoi/tensorflow
Computation using data flow graphs for scalable machine learning
kirichoi/word_cloud
A little word cloud generator in Python