Add helen to bioconda.
xiekunwhy opened this issue · 5 comments
Hi,
Can you add helen to bioconda? It is so difficult To install helen on a centos machine.
Best
Kun
I am sorry to hear that @xiekunwhy . We have some deadlines to meet otherwise I'd make this a priority. I will try my best to have this included in bioconda before the next release, which is hopefully next month, before or after London Calling.
Hi, I work in a centos and have the same problem than xiekunwhy. Any news about bioconda? thanks
Hi @xiekunwhy and @AntonioBaeza ,
Our new polishing tool PEPPER (https://github.com/kishwarshafin/pepper), gives significantly better results than MarginPolish-HELEN with newer data, guppy 3.6.0 +. We are planning to support PEPPER for newer versions of basecallers. Would you mind trying PEPPER out? I am using PEPPER on centOS 7, so I can help you with errors if you face any.
@AntonioBaeza , we have replaced MarginPolish-HELEN
with PEPPER
:
https://github.com/kishwarshafin/pepper/releases/tag/v0.1
You can install it via pip. Please let me know if that works for you. I'm closing this issue.