kjolley/BIGSdb

Issues

• Indicate sequencing technology on isolate info page

  #1016 opened 2 months ago by kjolley
  0

• Consider making curate_only fields only display in curator interface

  #1015 opened 2 months ago by kjolley
  0

• Use LIN code to identify similar profiles/isolates on profileInfo page

  #1014 opened 2 months ago by kjolley
  0

• Automated generation of API Keys

  #1008 opened 2 months ago by kjolley
  0

• Add options to sequence query to query only nucleotide, or only protein loci.

  #1012 opened 2 months ago by kjolley
  0

• Add BLAST param options on sequence query page

  #1006 opened 2 months ago by kjolley
  0

• Collapse multiple coincident cgSTs in isolate results table

  #1013 opened 2 months ago by kjolley
  0

• Add option to schemes table to use cache for maindisplay results

  #972 opened 2 months ago by kjolley
  0

• Add option to sequence query page to pull closest cgST and nearest matches using LINcodes

  #975 opened 2 months ago by kjolley
  1

• Indicate LINcode of closest matching cgST in sequence query

  #1000 opened 2 months ago by kjolley
  1

• LIN code prefix fields should appear in 'Similar isolates (determined by LIN codes)' section of isolate info page

  #1011 opened 2 months ago by kjolley
  1

• Separate locus common name in sequence query output

  #1005 opened 2 months ago by kjolley
  1

• Send a notification to curators if publication of private isolates has been requested

  #1010 opened 3 months ago by kjolley
  0

• Remove Genbank accession sequence query option

  #1004 opened 3 months ago by kjolley
  0

• Add restricted view message on isolate query page

  #1009 opened 3 months ago by kjolley
  0

• Creating a new version of isolate record where separate_dataset="yes" is set in config.xml can lead to a crash

  #1007 opened 3 months ago by kjolley
  0

• Add placeholder text on query boxes

  #1003 opened 3 months ago by kjolley
  1

• Allele sequence checkbox occasionally is not automatically checked when an exact match allele is found on web scan

  #970 opened 4 months ago by kjolley
  3

• The 'Embargo requested' column should not be present in the assembly submission table

  #1002 opened 4 months ago by kjolley
  1

• Sequence attribute search in curator interface has plugin buttons that lead to wrong analysis

  #1001 opened 5 months ago by kjolley
  0

• Add seqbin_downloads_require_login option

  #999 opened 5 months ago by kjolley
  0

• Add option to hyperlink to different address depending on regex of field value

  #997 opened 6 months ago by kjolley
  0

• Breadcrumb links on permissions page are not complete

  #998 opened 6 months ago by kjolley
  1

• FastaExport and ProfileExport plugins should respect the values of allele_downloads_require_login and profile_downloads_require_login

  #996 opened 6 months ago by kjolley
  0

• Suggestion on round and lround module of POSIX

  #995 opened 6 months ago by abrozzi
  1

• Check GenomeComparator/SNPsites ref sequence FASTA file

  #994 opened 6 months ago by kjolley
  0

• The isolate select list in Export.pm uses the count of genomes to decide whether to use a scrolling list

  #993 opened 6 months ago by kjolley
  1

• Add option to export LINcode prefixes of specific length

  #992 opened 7 months ago by kjolley
  0

• Add option to ignore '0' in scheme completion stats

  #990 opened 7 months ago by kjolley
  1

• Chart of core loci y-axis is mislabelled

  #991 opened 7 months ago by kjolley
  0

• Some genome submissions can be finalized with invalid assembly filenames uploaded

  #989 opened 8 months ago by kjolley
  1

• Query_interface_fields table does not have id set as foreign key

  #987 opened 7 months ago by kjolley
  0

• Have a way of indicating in isolate info and data export that there are multiple sequence tags for a locus

  #965 opened 8 months ago by kjolley
  0

• Add option to disable downloads in a specific database configuration

  #979 opened 8 months ago by kjolley
  1

• Make locus extended attributes accessible for export

  #988 opened 8 months ago by kjolley
  0

• Add query items to the isolate database non-dashboard contents page righthand sidebar

  #985 opened 8 months ago by kjolley
  0

• List query box is not populated when used and paging back to first page in a TableQuery

  #986 opened 8 months ago by kjolley
  0

• Database-specific configuration?

  #984 opened 8 months ago by zmeel
  2

• Make private data more obvious in exports

  #981 opened 8 months ago by kjolley
  0

• Add permissions to enable download of private data belonging to other people

  #983 opened 8 months ago by kjolley
  0

• Add option for scannew to only scan records that have passed assembly checks.

  #977 opened 8 months ago by kjolley
  0

• Add option for scannew.pl to not check private records

  #976 opened 8 months ago by kjolley
  0

• Disable private data inclusion in export by default

  #982 opened 8 months ago by kjolley
  0

• Add option to disable downloads of private data owned by someone else to which access has been shared

  #980 opened 8 months ago by kjolley
  0

• Hyperlink schemes on isolate info page to link to their descriptions

  #978 opened 8 months ago by kjolley
  0

• The checkbox when scanning for missing loci is displaced to the wrong column

  #974 opened 8 months ago by kjolley
  0

• Scheme with analysis=false should not be listed on tag scan page.

  #969 opened 9 months ago by kjolley
  0

• Use multiselect box in plugin field inclusion selection

  #968 opened 9 months ago by kjolley
  1

• Limit extracted sequences width to 100bp to ensure it lines up with translated sequence

  #966 opened 9 months ago by kjolley
  0

• Seqbin breakdown as admin on private records using job manager do not show isolate names

  #967 opened 9 months ago by kjolley
  1