kkuret

Pinned Repositories

• nf-clip

  Repo for the CLIP nextflow analysis pipeline

  Language:Nextflow49400

• pyranges

  Performant Pythonic GenomicRanges

  Language:Python4481322146

• bs_assign

  Find groups of motifs around genomic landmarks of interest

  Language:Python00

• cluster_kmers

  Get clusters of k-mers based solely on their sequence or in combination with enrichment in PEKA.

  Language:Python0100

• cv_coverage

  Language:Python1100

• gtf-ops

  Filtering GENCODE or ENSEMBLE annotation in GTF format. Annotating missing regions in iCount genomic segmentation.

  Language:Python0100

• imaps

  Language:Python0403

• LIN28A_RNPreassembly_bioinformatics

  This repository contains the source code used for bioinformatic analyses presented in the paper by Modic et al., 2024 "Poised PABP-RNA hubs implement signal-dependent mRNA decay in development".

  Language:Jupyter Notebook0100

• peka

  Find motifs enriched around prominent crosslinks

  Language:Python5382

kkuret's Repositories