/VARify

Transcriptional variant verification to validate predicted variants from genomic data in expressed transcripts

Primary LanguageHTML

NYU Bioinformatics Capstone Project: VARify

Contents

  • Notebook: notebook/varify_notebook.ipynb
  • Test Data: data/test/
  • Report Script: script/main.py
  • Utility File: script/utility.py

How to use

  • --in_pileup mpileup file in txt format
  • --in_snpeff snpeff-like table in txt format
python3 '../script/main.py' --in_pileup <mpileup_file> --in_snpeff <snpefftable_file>