Mugsy - multiple whole genome alignment tool
This is a fork of the original sourceforge project [1]. It features bug fixes and performance improvements. However, at the moment compiling is still not ideal. Use with care.
Good luck.
make
Mugsy requires two additional renvironment variables.
PERL5LIB=$PWD MUGSY_INSTALL=$PWD ./mugsy genome1.fa genome2.fa genome3.fa
The output is written to /tmp/tmp.maf.
This code is a chimera of at least the following projects:
- seqan
- mummer
- multiz
- mugsy Artistic License 2.0
Angiuoli SV, Salzberg SL. Mugsy: Fast multiple alignment of closely related whole genomes. Bioinformatics. 2010 Dec 9.