klprint

Molecular biology MSc student who is very interested in programming.

Pinned Repositories

embedding_explorer
Interactive shiny app for gene expression exploration in low dimensional embeddings
Language:R1 3 00
fun_dm_paper
Language:HTML1 2 10
TrypRNAseq
Pipeline for RNAseq read counting of Trypanosoma reads
Language:CSS1 2 01

klprint's Repositories

klprint/embedding_explorer
Interactive shiny app for gene expression exploration in low dimensional embeddings
Language:R1 3 00
klprint/fun_dm_paper
Language:HTML1 2 10
klprint/cellranger_recount
Language:Python
klprint/countland
tools in python and R for analyzing biological count data, especially from single cell RNAseq
klprint/covid19
Language:HTML
klprint/customSC
Language:R2 0
klprint/docker-stan
Dockerfiles with rstan and CmdStan
klprint/DS_ML_Kurs_2021
2 0
klprint/emacs-slack
slack client for emacs
Language:Emacs Lisp2 0
klprint/GanTTY
Project planning from the terminal
klprint/GMPR
Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data
Language:R2 0
klprint/GPclust
Clustering time series using Gaussian processes and Variational Bayes.
Language:Jupyter Notebook1 0
klprint/integer_matrix_approximation
approximation of integer matrix factorization for python and r
klprint/klprint.github.io
A configurable portfolio-style jekyll theme for writers.
Language:CSS1 0
klprint/linux-timemachine
Rsync-based OSX-like time machine for Linux, MacOS and BSD for atomic and resumable local and remote backups
Language:Shell
klprint/markerDB
R access to MarkerDB
Language:R1
klprint/MiMB_manuscript_2018
2 0
klprint/parse_org
Language:Python2 0
klprint/pydna
Python classes for double stranded DNA and functions for simulating homologous recombination, Gibson assembly and cut&paste cloning.
Language:Jupyter Notebook2 0
klprint/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Language:Python0 0
klprint/r-countland
Language:R
klprint/r-ima
Language:R
klprint/sc_methods
Playing with single-cell data
Language:Jupyter Notebook2 0
klprint/sc_nbnb
Language:R2 0
klprint/scpython
Language:Python2 0
klprint/sctools
Language:R2 0
klprint/snCerFun
Language:R2 0
klprint/snscrape
A social networking service scraper in Python
Language:Python1 0
klprint/STAR
RNA-seq aligner
klprint/SuperCell
Coarse-graining of large single-cell RNA-seq data into metacells