Pinned Repositories
embedding_explorer
Interactive shiny app for gene expression exploration in low dimensional embeddings
fun_dm_paper
TrypRNAseq
Pipeline for RNAseq read counting of Trypanosoma reads
klprint's Repositories
klprint/embedding_explorer
Interactive shiny app for gene expression exploration in low dimensional embeddings
klprint/fun_dm_paper
klprint/cellranger_recount
klprint/countland
tools in python and R for analyzing biological count data, especially from single cell RNAseq
klprint/covid19
klprint/customSC
klprint/docker-stan
Dockerfiles with rstan and CmdStan
klprint/DS_ML_Kurs_2021
klprint/emacs-slack
slack client for emacs
klprint/GanTTY
Project planning from the terminal
klprint/GMPR
Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data
klprint/GPclust
Clustering time series using Gaussian processes and Variational Bayes.
klprint/integer_matrix_approximation
approximation of integer matrix factorization for python and r
klprint/klprint.github.io
A configurable portfolio-style jekyll theme for writers.
klprint/linux-timemachine
Rsync-based OSX-like time machine for Linux, MacOS and BSD for atomic and resumable local and remote backups
klprint/markerDB
R access to MarkerDB
klprint/MiMB_manuscript_2018
klprint/parse_org
klprint/pydna
Python classes for double stranded DNA and functions for simulating homologous recombination, Gibson assembly and cut&paste cloning.
klprint/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
klprint/r-countland
klprint/r-ima
klprint/sc_methods
Playing with single-cell data
klprint/sc_nbnb
klprint/scpython
klprint/sctools
klprint/snCerFun
klprint/snscrape
A social networking service scraper in Python
klprint/STAR
RNA-seq aligner
klprint/SuperCell
Coarse-graining of large single-cell RNA-seq data into metacells