Pinned Repositories
hla3
weight of evidence of HLA allele expression based on bulk TCR beta-chain repertoires
miniconda3dockerfile
Dockerfile for miniconda3
nf-mixcr
Nextflow Pipeline For MiXCR (TCR Features From Bulk fastq files)
NIA34780B
tcrdist2
Quantifiable predictive features define epitope-specific T cell receptor repertoires
tcrdist3
flexible CDR based distance metrics
tcrregex
regex based motif discovery
tcrsampler
Sample TCRs according to VDJ gene usage frequency
zipdist
Keeping Numpy and Pandas attributes of python classes nice and tidy
kmayerb's Repositories
kmayerb/tcrdist3
flexible CDR based distance metrics
kmayerb/tcrdist2
Quantifiable predictive features define epitope-specific T cell receptor repertoires
kmayerb/hla3
weight of evidence of HLA allele expression based on bulk TCR beta-chain repertoires
kmayerb/nf-mixcr
Nextflow Pipeline For MiXCR (TCR Features From Bulk fastq files)
kmayerb/NIA34780B
kmayerb/tcrsampler
Sample TCRs according to VDJ gene usage frequency
kmayerb/estimate_radius
example of more intensive TCR radius estimation
kmayerb/zipdist
Keeping Numpy and Pandas attributes of python classes nice and tidy
kmayerb/10X_utils
Tools for Parsing 10X Standard Outputs
kmayerb/baserebase
kmayerb/cdr3art
concise visualization of T cell junctions
kmayerb/clonality
Metrics for Clonality in Python
kmayerb/clumptydumpty
kmayerb/coop-puzzles
kmayerb/debug-practicum
Practice Debugging in RStudio
kmayerb/flowplyr
Read and manipulate .fcs, .xml files associated with flow cytoplasms events for downstream analysis
kmayerb/HLAGuessr_EXP
kmayerb/i4TB_Jan_2022
Live Demo of tcrdist3
kmayerb/knead-docker
Dockerfile and nf-pipeline for trimming and removing human RNA
kmayerb/Meleagris
really basic turkey package
kmayerb/merge-conflicts
kmayerb/mRNA_vaccination_boosts_spike_specific_T_cell_memory
kmayerb/nf-to-python
Run any embarrassingly parallel Python routine on many files using NextFlow
kmayerb/postcards
💌 Create simple, beautiful personal websites and landing pages using only R Markdown.
kmayerb/stitchr
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
kmayerb/tcrdist3-ms
TCR meta-clonotypes with tcrdist3
kmayerb/tcrdist3_book_chapter
kmayerb/tenextra
extra tools for parsing 10X outputs
kmayerb/use_mixcr
kmayerb/vaccine_deg