kmfisch

University of California, San DiegoLa Jolla, CA

Pinned Repositories

bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
Language:Python0 1 00
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
pe_cfrna
Language:Jupyter Notebook8 1 41
tableone
Create "Table 1" for research papers in Python
Language:Python166 10 11241
C-VIEW
This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.
Language:Python9 8 1272
Friedman_WGS
Language:Shell0 3 00
jupyter-pathway
Canonical pathway visualization and analysis
Language:Jupyter Notebook5 12 02
MPN_atlas_methods
Source code for methods for A Dynamic Pre-Leukemia Stem Cell Atlas of Myeloproliferative Neoplasm Evolution
Language:Jupyter Notebook2 2 00
VAPr
VAPr: A Python package for NoSQL variant data storage, annotation and prioritization
Language:Python34 13 243
Ward_scRNAseq_2019
Code for BMAC single cell RNAseq analysis
Language:Jupyter Notebook0 2 00

kmfisch's Repositories

kmfisch/bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
Language:Python0 1 00
kmfisch/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00