Pinned Repositories
AreaAnalysis
Image analysis code from Cell Paper
bc
Template for Software Carpentry bootcamp site repository.
classwork
Problem sets and such for Transcode.
dagdata
Data for the HarvardX courses: PH525x
hmmer
HMMER: biological sequence analysis using profile HMMs
HyperInteractive
Interactive exploration of hyperparameter tuning results with ipywidget and plotly in jupyter notebook.
image_processing
microscopy image processing scripts to help me process my data
surfaceome_modeling
kmsouthard's Repositories
kmsouthard/AreaAnalysis
Image analysis code from Cell Paper
kmsouthard/bc
Template for Software Carpentry bootcamp site repository.
kmsouthard/classwork
Problem sets and such for Transcode.
kmsouthard/dagdata
Data for the HarvardX courses: PH525x
kmsouthard/hmmer
HMMER: biological sequence analysis using profile HMMs
kmsouthard/HyperInteractive
Interactive exploration of hyperparameter tuning results with ipywidget and plotly in jupyter notebook.
kmsouthard/image_processing
microscopy image processing scripts to help me process my data
kmsouthard/surfaceome_modeling
kmsouthard/JunctionAnalysis
Notch/Cadherin junction intensity analysis
kmsouthard/matlab-storm
GUIs and functions for analyzing STORM data in MATLAB
kmsouthard/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
kmsouthard/trackpy
Python particle tracking toolkit
kmsouthard/wf-single-cell
experimenting with modifying the adaptors to account for custom library prep